New strategy in the discovery of Natural AntiTuberculosis Agents from French Guiana flora



Project is financed by Agence National de Recherche. Project no ANR-22-CE43-0002



About the project

Nowadays, approximately 60% of the world’s population uses herbal medicines, and plants are recognized as a source of therapeutically effective drugs. Natural products are an important source of new structural scaffolds and have always been a privileged source of inspiration in drug discovery.

In our SONATA project, we focus on tackling tuberculosis (TB), one of the top 10 leading causes of death worldwide. Despite 100 years of vaccination and 60 years of antibiotherapy, TB remains a significant global health challenge. French Guiana, with its high notification rate, is particularly affected. Additionally, French Guiana is a biodiversity hotspot where local communities have long relied on traditional plant-based remedies to treat TB symptoms.

To address this, our project combines traditional ethnopharmacology with cutting-edge metabolomics and bio/chemoinformatics approaches. This integrated approach allows us to identify bioactive compounds from plants and select suitable samples for further isolation and purification.

The ethnopharmacological approach serves as the initial filtering step, focusing on plants already known for their anti-Mycobacterium tuberculosis activity or traditional medicinal use in TB treatment. Given the diverse botanical families of plants, we expect to discover compounds from different chemical classes.

Bio/chemoinformatics approaches represent the subsequent filtering steps, reducing the number of compounds requiring purification and avoiding unnecessary time-wasting processes. Throughout the project, we evaluate the anti-M. tuberculosis activity of extracts, fractions, and isolated compounds to guide our research.

SONATA project has four main aims:

  • Metabolomic profiling of plants
  • In silico modeling and bio/chemoinformatics
  • Purification and identification of compounds
  • Evaluation of anti-M. tuberculosis activity

Three essential filtering steps

In the context of a responsible approach for the access to plant resources, it is important to choose relevant species to achieve the aims of this project.

Ethnopharmacological approach

The first filter in lead discovery, is the plant selection based on traditional use in the treatment of TB symptoms, such as cough, fever, chest pain. This list was completed with local plants, with already reported anti-Mycobacterium tuberculosis activity.

Feature-Based Molecular Network

The biological evaluation results will be associated with the feature-based molecular network and will lead to the determination of active chemical features. This part constitutes the 2nd filtering step in the selection of leads.

Pharmacophore based Lead Discovery

Active chemical features will be evaluated in silico with a 3D pharmacophore approach of targets involved in the Mycobacterium tuberculosis development.

Plant species

Aspidosperma carapanauba

Aspidosperma carapanauba

Apocynaceae

Aspidosperma oblongum

Aspidosperma oblongum

Apocynaceae

Curatella americana

Curatella americana

Dilleniaceae

Davilla nitida

Davilla nitida

Dilleniaceae

Dipteryx punctata

Dipteryx punctata

Fabaceae

Indigofera suffruticosa

Indigofera suffruticosa

Fabaceae

Lantana trifolia

Lantana trifolia

Fabaceae

Physalis angulata

Physalis angulata

Solanaceae

Tetradenia riparia

Tetradenia riparia

Lamiaceae

Quassia amara

Quassia amara

Simaroubaceae

Zingiber zerumbet

Zingiber zerumbet

Zingiberaceae

Research team

Elnur Garayev

Dr. Elnur Garayev

Associate professor

IMBE/Aix-Marseille University

Sok-Siya Bun-Llopet

Pr. Sok-Siya Bun-Llopet

Professor Hospital Practicionner

IMBE/Aix-Marseille University

Béatrice Baghdikian

Dr. Béatrice Baghdikian

Associate Professor

IMBE/Aix-Marseille University

Charlotte Simmler

Dr. Charlotte Simmler

Research Scientist (CR CNRS)

IMBE/Aix-Marseille University

Stéphane Canaan

Dr. Stéphane Canaan

Research Scientist (DR CNRS)

LISM

Gaëtan Herbette

Dr. Gaëtan Herbette

Research Scientist (IR AMU)

Spectropole/Aix-Marseille University

Sandrine Alibert

Dr. Sandrine Alibert

Associate Professor

MCT/Aix-Marseille University

Jean-François Cavalier

Dr. Jean-François Cavalier

Research Scientist (DR CNRS)

LISM

Mariana Royer

Dr. Mariana Royer

CEO

Bio-Stratège SAS

Célia Breaud

Célia Breaud

PhD Student

IMBE/Aix-Marseille University

Clémentine Saunier

Clémentine Saunier

PhD Student

IMBE-LISM/Aix-Marseille University

Clémentine Saunier

Maximilien Fil

PhD Student

IMBE-MCT/Aix-Marseille University

Fathi Mabrouki

Fathi Mabrouki

Assistant Engineer

IMBE/Aix-Marseille University

Myriam Bertolotti

Myriam Bertolotti

Technician

IMBE/Aix-Marseille University

Stéphane Greff

Dr. Stéphane Greff

Chemical Engineer

IMBE/Aix-Marseille University

Caroline Lecareux

Caroline Lecareux

Chemical Engineer

IMBE/Aix-Marseille University

Partners







120+

Extractions

1200+

Analysis

3000 +

Hours

500000 +

Spectras

Outcomes

News Image 1

Research day at the Faculty of Pharmacy of Marseille

Date: October 13, 2022

Presented SONATA Project to students and staff of the Faculty of Pharmacy of Aix-Marseille University.

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News Image 2

Publication in the local blog

Date: March 24, 2023

Glad to share with you the first article published in the blog for local people about our projet SONATA financed by ANR, the French National Research Agency.

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Where we are

Send us a message

Don't hesitate to contact us if you have any questions or collaboration proposals.

E-mail:

Phone-number: +33 4 91 83 55 42